Publications – Cardiac Atlas Project

CG Fonseca, M Backhaus, DA Bluemke, RD Britten, JD Chung, BR Cowan, ID Dinov, JP Finn, PJ Hunter, AH Kadish, DC Lee, JAC Lima, P Medrano-Gracia, K Shivkumar, A Suinesiaputra, W Tao, and AA Young. The Cardiac Atlas Project – An imaging database for computational modeling and statistical atlases of the heart. Bioinformatics, 27(16):2288–2295, Aug 2011. [color version]
A Suinesiaputra, P Medrano-Gracia, BR Cowan, and AA Young. Big Heart Data: Advancing Health Informatics Through Data Sharing in Cardiovascular Imaging. IEEE J. Biomed. Health Inform., 19(4):1283-1290, July 2015.

K Gilbert, N Forsch, S Hegde, C Mauger, JH Omens, JC Perry, B Pontré, A Suinesiaputra, AA Young and AD McCulloch. Atlas-Based Computational Analysis of Heart Shape and Function in Congenital Heart Disease. Journal of Cardiovascular Translational Research, 1-10, 2018.
X Albà, K Lekadir, M Pereañez, P Medrano-Gracia, AA Young and AF Frangi. Automatic initialization and quality control of large-scale cardiac MRI segmentations. Medical Image Analysis, 43:129-141, January 2018.

P Piras, L Teresi, PE Puddu, C Torromeo, AA Young, A Suinesiaputra and P Medrano-Gracia. Morphologically normalized left ventricular motion indicators from MRI feature tracking characterize myocardial infarction. Scientific Reports, 7:12259, September, 2017.
K Gilbert, B Pontre, CJ Occleshaw, BR Cowan, A Suinesiaputra and AA Young. 4D modelling for rapid assessment of biventricular function in congenital heart disease. International Journal of Cardiovascular Imaging, 1-11, Aug, 2017.
A Suinesiaputra, MM Sanghvi, N Aung, JM Paiva, F Zemrak, K Fung, E Lukaschuk, AM Lee, V Carapella, YJ Kim, J Francis, SK Piechnik, S Neubauer, A Greiser, M-P Jolly, C Hayes, AA Young and SE Petersen. Fully-automated left ventricular mass and volume MRI analysis in the UK Biobank population cohort: evaluation of initial results. International Journal of Cardiovascular Imaging, 1-11, Aug, 2017.
A Suinesiaputra, P Ablin, X Alba, M Alessandrini, J Allen, W Bai, S Cimen, P Claes, BR Cowan, J D'hooge, N Duchateau, J Ehrhardt, AF Frangi, A Gooya, V Grau, K Lekadir, A Lu, A Mukhopadhyay, I Oksuz, X Pennec, M Pereanez, C Pinto, P Piras, M-M Rohe, D Rueckert, M Sermesant, K Siddiqi, M Tabassian, L Teresi, SA Tsaftaris, M Wilms, AA Young, X Zhang and P Medrano-Gracia. Statistical shape modeling of the left ventricle: myocardial infarct classification challenge. IEEE Journal of Biomedical and Health Informatics, 99:1, 2017.
X Zhang, P Medrano-Gracia, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, AH Kadish, DC Lee, JAC Lima, AA Young and A Suinesiaputra. Orthogonal decomposition of left ventricular remodelling in myocardial infarction. Gigascience, gix005, 2017.

G Farrar, A Suinesiaputra, K Gilbert, JC Perry, S Hegded, A Marsden, AA Young, JH Omens, AD McCulloch. Atlas-based ventricular shape analysis for understanding congenital heart disease. Progress in Pediatric Cardiology, 43:61-69, 2016.
B Pontré, BR Cowan, E DiBella, S Kulaseharan, D Likhite, N Noorman, L Tautz, N Tustison, G Wollny, AA Young, and A Suinesiaputra. An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI. IEEE Journal of Biomedical and Health Informatics, 99:1-1, 2016.
A Suinesiaputra, AD McCulloch, MP Nash, B Pontre, AA Young. Cardiac image modelling: Breadth and depth in heart disease. Medical Image Analysis, 33:38–43, October 2016.
A Suinesiaputra, GE Farrar, K Gilbert, S Hegde, AD McCulloch, J Omens, JC Perry and A Young. Application of Atlas-based global shape and local contraction analysis to single-ventricle congenital heart disease. Journal of Cardiovascular Magnetic Resonance, 18(Suppl 1):P154, 2016.
AK Ortiz, A Suinesiaputra, A Young, GE Farrar, BF Printz, J Omens, AD McCulloch, JC Perry and S Hegde. Left ventricular shape variation in patients with aortic coarctation pre- and post-stent implantation. Journal of Cardiovascular Magnetic Resonance, 18(Suppl 1):P186, 2016.

A Suinesiaputra, P Medrano-Gracia, BR Cowan, and AA Young. Big Heart Data: Advancing Health Informatics Through Data Sharing in Cardiovascular Imaging. IEEE J. Biomed. Health Inform., 19(4):1283-1290, July 2015.
X Zhang, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, AH Kadish, DC Lee, JAC Lima, WG Hundley, A Suinesiaputra, AA Young, and P Medrano-Gracia. Information maximizing component analysis of left ventricular remodeling due to myocardial infarction. Journal of Translational Medicine 13, 1 (2015), 1–9.
X Zhang, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, WG Hundley, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra, AA Young and P Medrano-Gracia. Orthogonal Shape Modes Describing Clinical Indices of Remodeling. In 8th International Conference on Functional Imaging and Modeling of the Heart. LNCS vol. 9126, pp 273-281, 2015.
A Suinesiaputra, DA Bluemke, BR Cowan, MG Friedrich, CM Kramer, R Kwong, S Plein, J Schulz-Menger, JJM Westenberg, AA Young, and E Nagel. Quantification of LV function and mass by cardiovascular magnetic resonance: multi-center variability and consensus contours. J Cardiov Magn Reson, 17(63), July 2015.
W Bai, W Shi, C Ledig and D Rueckert. Multi-atlas segmentation with augmented features for cardiac MR images. Medical Image Analysis, 19(1):98-109, Jan 2015.
J Margeta, A Criminisi, RC Lozoyaa, DC Lee, and N Ayache. Fine-tuned convolutional neural nets for cardiac MRI acquisition plane recognition. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 2015.
Z Wang, A Nasiraei-Moghaddam, ML Reyhan, S Srinivasan, JP Finn, and Daniel B. Ennis. Complementary Radial Tagging for Improved Myocardial Tagging Contrast. Magn Reson Med. 73(4):1432-1440, April 2015.

X Zhang, BR Cowan, DA Bluemke, JPF, CG Fonseca, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra, AA Young and P Medrano-Gracia, Atlas-Based Quantification of Cardiac Remodeling Due to Myocardial Infarction, PloS ONE, 9(10): e110243, 2014.
P Medrano-Gracia, BR Cowan, B Ambale-Venkatesh, DA Bluemke, J Eng, JP Finn, CG Fonseca, JAC Lima, A Suinesiaputra, and AA Young, Left ventricular shape variation in asymptomatic populations: the multi-ethnic study of atherosclerosis, J Cardiov Magn Reson, 16:56, 2014.
P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra and AA Young, Continuous Spatio-temporal Atlases of the Asymptomatic and Infarcted Hearts, in Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2014), LNCS vol. 8330, pp. 143–151, 2014.
A Suinesiaputra, BR Cowan, AO Al-Agamy, MA Elattar, N Ayache, AS Fahmy, AM Khalifa, P Medrano-Gracia, M-P. Jolly, AH Kadish, DC Lee, J Margeta, SK Warfield, and AA Young. A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Medical Image Analysis, 18(1):50 – 62, 2014.
W Shi, H Lombaert, W Bai, C Ledig, X Zhuang, A Marvao, T Dawes, D O’Regan and D Rueckert. Multi-atlas Spectral PatchMatch: Application to Cardiac Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, LNCS vol. 8673, pp 348-255, 2014.
J Margeta, A Criminisi, DC Lee, and N Ayache. Recognizing cardiac magnetic resonance acquisition planes. In MIUA - Medical Image Understanding and Analysis Conference - 2014. 2014.

P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, JAC Lima, A Suinesiaputra and AA Young, Large Scale Left Ventricular Shape Atlas Using Automated Model Fitting to Contours, In 7th Functional Imaging and Modeling of the Heart (FIMH), LNCS vol. 7945, pp 433-441, 2013.
P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, DC Lee, JAC Lima, A Suinesiaputra and AA Young, Optimal patient classification via statistical decomposition of a 3D left-ventricular atlas. J Cardiovasc Magn Reson. 15(Suppl 1):P89, 2013.
P Medrano-Gracia, A Suinesiaputra, BR Cowan, DA Bluemke, A Frangi, DC Lee, JAC Lima and AA Young. An Atlas for Cardiac MRI Regional Wall Motion and Infarct Scoring, In Third International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2012), LNCS vol. 7746, pp 188-197, 2013.
P. Medrano-Gracia, B.R. Cowan, D.A. Bluemke, J.P. Finn, A.H. Kadish, D.C. Lee, J.A.C. Lima, A. Suinesiaputra and A.A. Young. Atlas-based analysis of cardiac shape and function: correction of regional shape bias due to imaging protocol for population studies. J Cardiovasc Magn Reson. 15:80, 2013.
D Mahapatra. Cardiac image segmentation from cine cardiac MRI using graph cuts and shape priors. J Digit Imaging, 26(4):721–30, Aug 2013.
D Mahapatra. Cardiac MRI segmentation using mutual context information from left and right ventricle. J Digit Imaging, 26(5):898–908, Oct 2013.
Y Tsadok, Y Petrank, S Sarvari, T Edvardsen, and D Adam. Automatic segmentation of cardiac MRI cines validated for long axis views. Comput Med Imaging Graph, 37(7-8):500–11, 2013.
A Suinesiaputra, BR Cowan, DA Bluemke, P Medrano-Gracia, DC Lee, JAC Lima and AA Young, Intraventricular Dyssynchrony Assessment Using Regional Contraction from LV Motion Models, In 7th Functional Imaging and Modeling of the Heart (FIMH), LNCS vol. 7945, pp 458-465, 2013.
A Suinesiaputra, DA Bluemke, BR Cowan, P Medrano-Gracia, PE Radau, and AA Young, The effect of septal basal segments in the assessment of systolic dyssynchrony index. J Cardiovasc Magn Reson. 15(Suppl 1):P77, 2013.
X Lu and M-P Jolly. Discriminative context modeling using auxiliary markers for LV landmark detection from a single MR image. In Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2013), LNCS vol. 7746, pp 105–114, 2013.
VY Wang, AA Young, BR Cowan and MP Nash. Changes in In Vivo Myocardial Tissue Properties Due to Heart Failure. In Functional Imaging and Modeling of the Heart, LNCS vol. 7945, pp 216-223, 2013.

P Medrano-Gracia, DA Bluemke, BR Cowan, JP Finn, DC Lee, JAC Lima, A Suinesiaputra, and AA Young. Detection and correction of regional shape bias arising from imaging protocol: differences between GRE and SSFP. J Cardiovasc Magn Reson, 14 Suppl 1:P270, Feb 2012.
P Medrano-Gracia, DA Bluemke, BR Cowan, JP Finn, C Fonseca, JAC Lima, A Suinesiaputra, and AA Young. Maximum Likelihood Correction of Shape Bias Arising from Imaging Protocol: Application to Cardiac MRI. In 2nd International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol. 7085, pp 214–223, 2012.
A Fahmy, A Al-Agamy, and A Khalifa. Myocardial segmentation using contour-constrained optical flow tracking. In 2nd International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS 7085, pp 120–128, 2012.
M-P Jolly, C Guetter, X Lu, H Xue, and J Guehring. Automatic segmentation of the myocardium in cine MR images using deformable registration. In 2nd International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol. 7085, pp 98–108, 2012.
J Margeta, E Geremia, A Criminisi, and N Ayache. Layered spatio-temporal forests for left ventricle segmentation from 4D cardiac MRI data. In 2nd International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol 7085, pp 109–119, 2012.
A Suinesiaputra, BR Cowan, JP Finn, C Fonseca, AH Kadish, DC Lee, P Medrano-Gracia, S Warfield, W Tao, and AA Young. Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study. In Second International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol. 7085, pp 88–97, 2012.
MMA Hadhoud, MI Eladawy and A Farag. Region of Interest Localization of Cardiac Structure from Cine MRI Images. In Ninth International Conference on Information Technology: New Generations (ITNG), 2012. IEEE, pp 14-17, 2012.
Z Zhang, DJ Sahn and X Song. Diffeomorphic Cardiac Motion Estimation with Anisotropic Regularization along Myofiber Orientation. In 5th International Workshop, WBIR 2012, LNCS vol. 7359, pp 199-208, 2012.

P Medrano-Gracia, B Cowan, J Finn, C Fonseca, A Kadish, D Lee, W Tao, and A Young. The Cardiac Atlas Project: Preliminary description of heart shape in patients with myocardial infarction. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 46–53, 2010.
M Backhaus, R Britten, J Do Chung, BR Cowan, C Fonseca, P Medrano-Gracia, W Tao, and AA Young. The Cardiac Atlas Project: Development of a framework integrating cardiac images and models. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 54–64, 2010
C Fonseca, M Backhaus, J Do Chung, W Tao, P Medrano-Gracia, B Cowan, P Hunter, J Finn, K Shivkumar, J Lima, D Bluemke, A Kadish, D Lee, and A Young. The Cardiac Atlas Project: Rationale, Design and Procedures. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 36–45, 2010.
M Backhaus, J Do Chung, BR Cowan, CG Fonseca, W Tao, and AA Young. The Cardiac Atlas Project: Towards a map of the heart. In Patient-Specific Modeling of the Cardiovascular System Technology-Driven Personalized Medicine, pp 113–129. Springer, 2010.

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