Publications

Overview

• CG Fonseca, M Backhaus, DA Bluemke, RD Britten, JD Chung, BR Cowan, ID Dinov, JP Finn, PJ Hunter, AH Kadish, DC Lee, JAC Lima, P Medrano-Gracia, K Shivkumar, A Suinesiaputra, W Tao, and AA Young. The Cardiac Atlas Project – An imaging database for computational modeling and statistical atlases of the heart. Bioinformatics, 27(16):2288–2295, Aug 2011. [color version]
• A Suinesiaputra, P Medrano-Gracia, BR Cowan, and AA Young. Big Heart Data: Advancing Health Informatics Through Data Sharing in Cardiovascular Imaging. IEEE J. Biomed. Health Inform., 19(4):1283-1290, July 2015.
• P Medrano-Gracia, B Cowan, J Finn, C Fonseca, A Kadish, D Lee, W Tao, and A Young. The Cardiac Atlas Project: Preliminary description of heart shape in patients with myocardial infarction. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 46–53, 2010.
• M Backhaus, R Britten, J Do Chung, BR Cowan, C Fonseca, P Medrano-Gracia, W Tao, and AA Young. The Cardiac Atlas Project: Development of a framework integrating cardiac images and models. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 54–64, 2010
• C Fonseca, M Backhaus, J Do Chung, W Tao, P Medrano-Gracia, B Cowan, P Hunter, J Finn, K Shivkumar, J Lima, D Bluemke, A Kadish, D Lee, and A Young. The Cardiac Atlas Project: Rationale, Design and Procedures. In Statistical Atlases and Computational Models of the Heart, LNCS vol. 6364, pp 36–45, 2010.
• M Backhaus, J Do Chung, BR Cowan, CG Fonseca, W Tao, and AA Young. The Cardiac Atlas Project: Towards a map of the heart. In Patient-Specific Modeling of the Cardiovascular System Technology-Driven Personalized Medicine, pp 113–129. Springer, 2010.

MESA (asymptomatic) studies

• CA Mauger, K Gilbert, A Suinesiaputra, DA Bluemke, CO Wu, JAC Lima, AA Young, and B Ambale-Venkatesh. Multi-Ethnic Study of Atherosclerosis: Relationship between Left Ventricular Shape at Cardiac MRI and 10-year Outcomes. Radiology, 220122, 2022.
• A Suinesiaputra, CA Mauger, B Ambale-Venkatesh, DA Bluemke, J Dam Gade, K Gilbert, MHA Janse, LS Hald, C Werkhoven, CO Wu, JAC Lima, and AA Young. Deep Learning Analysis of Cardiac MRI in Legacy Datasets: Multi-Ethnic Study of Atherosclerosis. Frontiers in Cardiovascular Medicine, 8:807728, 2022
• P Medrano-Gracia, BR Cowan, B Ambale-Venkatesh, DA Bluemke, J Eng, JP Finn, CG Fonseca, JAC Lima, A Suinesiaputra, and AA Young,  Left ventricular shape variation in asymptomatic populations: the multi-ethnic study of atherosclerosis, J Cardiov Magn Reson, 16:56, 2014.

DETERMINE (myocardial infarction) studies

• X Zhang, P Medrano-Gracia, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, AH Kadish, DC Lee, JAC Lima, AA Young and A Suinesiaputra. Orthogonal decomposition of left ventricular remodelling in myocardial infarction. GigaScience, gix005, 2017.
• X Zhang, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, AH Kadish, DC Lee, JAC Lima, WG Hundley, A Suinesiaputra, AA Young, and P Medrano-Gracia. Information maximizing component analysis of left ventricular remodeling due to myocardial infarction. Journal of Translational Medicine 13, 1 (2015), 1–9.
• X Zhang, B Ambale-Venkatesh, DA Bluemke, BR Cowan, JP Finn, WG Hundley, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra, AA Young and P Medrano-Gracia. Orthogonal Shape Modes Describing Clinical Indices of Remodeling. In 8th International Conference on Functional Imaging and Modeling of the Heart. LNCS vol. 9126, pp 273-281, 2015.
• X Zhang, BR Cowan, DA Bluemke, JPF, CG Fonseca, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra, AA Young and P Medrano-Gracia,  Atlas-Based Quantification of Cardiac Remodeling Due to Myocardial Infarction, PloS ONE, 9(10): e110243, 2014.
• P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, AH Kadish, DC Lee, JAC Lima, A Suinesiaputra and AA Young,  Continuous Spatio-temporal Atlases of the Asymptomatic and Infarcted Hearts, in Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2014), LNCS vol. 8330, pp. 143–151, 2014.

Congenital heart disease studies

• CA Mauger, S Govil, R Chabiniok, K Gilbert, S Hegde, T Hussain, AD McCulloch, CJ Occleshaw, J Omens, JC Perry, K Pushparajah, A Suinesiaputra, L Zhong, and AA Young. Right-left ventricular shape variations in tetralogy of Fallot: associations with pulmonary regurgitation. Journal of Cardiovascular Magnetic Resonance, 23(1):105, 2021.
• K Gilbert, N Forsch, S Hegde, C Mauger, JH Omens, JC Perry, B Pontré, A Suinesiaputra, AA Young and AD McCulloch. Atlas-Based Computational Analysis of Heart Shape and Function in Congenital Heart Disease. Journal of Cardiovascular Translational Research, 1-10, 2018.
• A Suinesiaputra, GE Farrar, K Gilbert, S Hegde, AD McCulloch, J Omens, JC Perry and A Young. Application of Atlas-based global shape and local contraction analysis to single-ventricle congenital heart disease. Journal of Cardiovascular Magnetic Resonance, 18(Suppl 1):P154, 2016.
• G Farrar, A Suinesiaputra, K Gilbert, JC Perry, S Hegded, A Marsden, AA Young, JH Omens, AD McCulloch. Atlas-based ventricular shape analysis for understanding congenital heart disease. Progress in Pediatric Cardiology, 43:61-69, 2016.
• AK Ortiz, A Suinesiaputra, A Young, GE Farrar, BF Printz, J Omens, AD McCulloch, JC Perry and S Hegde. Left ventricular shape variation in patients with aortic coarctation pre- and post-stent implantation. Journal of Cardiovascular Magnetic Resonance, 18(Suppl 1):P186, 2016.

UK Biobank studies

• C Mauger, K Gilbert, AM Lee, MM Sanghvi, N Aung, K Fung, V Carapella, SK Piechnik, S Neubauer, SE Petersen, A Suinesiaputra & AA Young. Right ventricular shape and function: cardiovascular magnetic resonance reference morphology and biventricular risk factor morphometrics in UK Biobank. J Cardiov Magn Reson, 21(41), 2019.
• K Gilbert, W Bai, C Mauger, P Medrano-Gracia, A Suinesiaputra, AM Lee, MM Sanghvi, N Aung, SK Piechnik, S Neubauer, SE Petersen, D Rueckert & AA Young. Independent Left Ventricular Morphometric Atlases Show Consistent Relationships with Cardiovascular Risk Factors: A UK Biobank Study. Sci Rep, 9(1130), 2019.
• A Suinesiaputra, MM Sanghvi, N Aung, JM Paiva, F Zemrak, K Fung, E Lukaschuk, AM Lee, V Carapella, YJ Kim, J Francis, SK Piechnik, S Neubauer, A Greiser, M-P Jolly, C Hayes, AA Young and SE Petersen. Fully-automated left ventricular mass and volume MRI analysis in the UK Biobank population cohort: evaluation of initial results. International Journal of Cardiovascular Imaging, 1-11, Aug, 2017.

Challenges & concensus studies

• A Suinesiaputra, P Ablin, X Alba, M Alessandrini, J Allen, W Bai, S Cimen, P Claes, BR Cowan, J D'hooge, N Duchateau, J Ehrhardt, AF Frangi, A Gooya, V Grau, K Lekadir, A Lu, A Mukhopadhyay, I Oksuz, X Pennec, M Pereanez, C Pinto, P Piras, M-M Rohe, D Rueckert, M Sermesant, K Siddiqi, M Tabassian, L Teresi, SA Tsaftaris, M Wilms, AA Young, X Zhang and P Medrano-Gracia. Statistical shape modeling of the left ventricle: myocardial infarct classification challenge. IEEE Journal of Biomedical and Health Informatics, 99:1, 2017.
• B Pontré, BR Cowan, E DiBella, S Kulaseharan, D Likhite, N Noorman, L Tautz, N Tustison, G Wollny, AA Young, and A Suinesiaputra. An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI. IEEE Journal of Biomedical and Health Informatics, 99:1-1, 2016.
• A Suinesiaputra, DA Bluemke, BR Cowan, MG Friedrich, CM Kramer, R Kwong, S Plein, J Schulz-Menger, JJM Westenberg, AA Young, and E Nagel. Quantification of LV function and mass by cardiovascular magnetic resonance: multi-center variability and consensus contours. J Cardiov Magn Reson, 17(63), July 2015.
• A Suinesiaputra, BR Cowan, AO Al-Agamy, MA Elattar, N Ayache, AS Fahmy, AM Khalifa, P Medrano-Gracia, M-P. Jolly, AH Kadish, DC Lee, J Margeta, SK Warfield, and AA Young. A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Medical Image Analysis, 18(1):50 – 62, 2014.
• A Suinesiaputra, BR Cowan, JP Finn, C Fonseca, AH Kadish, DC Lee, P Medrano-Gracia, S Warfield, W Tao, and AA Young. Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study. In Second International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol. 7085, pp 88–97, 2012.

Cardiac modelling

• K Gilbert, B Pontre, CJ Occleshaw, BR Cowan, A Suinesiaputra and AA Young. 4D modelling for rapid assessment of biventricular function in congenital heart disease. International Journal of Cardiovascular Imaging, 1-11, Aug, 2017.
• A Suinesiaputra, AD McCulloch, MP Nash, B Pontre, AA Young. Cardiac image modelling: Breadth and depth in heart disease. Medical Image Analysis, 33:38–43, October 2016.
• P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, JAC Lima, A Suinesiaputra and AA Young, Large Scale Left Ventricular Shape Atlas Using Automated Model Fitting to Contours, In 7th Functional Imaging and Modeling of the Heart (FIMH), LNCS vol. 7945, pp 433-441, 2013.
• P Medrano-Gracia, BR Cowan, DA Bluemke, JP Finn, DC Lee, JAC Lima, A Suinesiaputra and AA Young, Optimal patient classification via statistical decomposition of a 3D left-ventricular atlas. J Cardiovasc Magn Reson. 15(Suppl 1):P89, 2013.
• P Medrano-Gracia, A Suinesiaputra, BR Cowan, DA Bluemke, A Frangi, DC Lee, JAC Lima and AA Young. An Atlas for Cardiac MRI Regional Wall Motion and Infarct Scoring, In Third International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2012), LNCS vol. 7746, pp 188-197, 2013.
• P. Medrano-Gracia, B.R. Cowan, D.A. Bluemke, J.P. Finn, A.H. Kadish, D.C. Lee, J.A.C. Lima, A. Suinesiaputra and A.A. Young. Atlas-based analysis of cardiac shape and function: correction of regional shape bias due to imaging protocol for population studies. J Cardiovasc Magn Reson. 15:80, 2013.
• A Suinesiaputra, BR Cowan, DA Bluemke, P Medrano-Gracia, DC Lee, JAC Lima and AA Young, Intraventricular Dyssynchrony Assessment Using Regional Contraction from LV Motion Models, In 7th Functional Imaging and Modeling of the Heart (FIMH), LNCS vol. 7945, pp 458-465, 2013.
• P Medrano-Gracia, DA Bluemke, BR Cowan, JP Finn, DC Lee, JAC Lima, A Suinesiaputra, and AA Young. Detection and correction of regional shape bias arising from imaging protocol: differences between GRE and SSFP. J Cardiovasc Magn Reson, 14 Suppl 1:P270, Feb 2012.
• P Medrano-Gracia, DA Bluemke, BR Cowan, JP Finn, C Fonseca, JAC Lima, A Suinesiaputra, and AA Young. Maximum Likelihood Correction of Shape Bias Arising from Imaging Protocol: Application to Cardiac MRI. In 2nd International Workshop, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges (STACOM 2011), LNCS vol. 7085, pp 214–223, 2012.